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Package: UCSCXenaShiny
Title: Interactive Analysis of UCSC Xena Data
Version: 1.1.11
Authors@R:
c(person(given = "Shixiang",
family = "Wang",
role = c("aut", "cre"),
email = "w_shixiang@163.com",
comment = c(ORCID = "0000-0001-9855-7357")),
person(given = "Yi",
family = "Xiong",
role = "aut",
email = "neuroxiong@openbiox.com",
comment = c(ORCID = "0000-0002-4370-9824")),
person(given = "Longfei",
family = "Zhao",
role = "aut",
email = "longfei8533@126.com",
comment = c(ORCID = "0000-0002-6277-0137")),
person(given = "Kai",
family = "Gu",
role = "aut",
email = "gukai1212@163.com",
comment = c(ORCID = "0000-0002-0177-0774")),
person(given = "Yin",
family = "Li",
role = "aut",
email = "yinli18@fudan.edu.cn"),
person(given = "Fei",
family = "Zhao",
role = "aut",
email = "zhaofei415@mails.ucas.edu.cn"))
Maintainer: Shixiang Wang <w_shixiang@163.com>
Description: Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
License: GPL (>= 3)
URL: https://github.com/openbiox/UCSCXenaShiny
BugReports: https://github.com/openbiox/UCSCXenaShiny/issues
Depends:
R (>= 3.5)
Imports:
dplyr (>= 0.8.3),
ezcox,
forcats,
ggplot2 (>= 3.2.0),
ggpubr (>= 0.2),
magrittr (>= 1.5),
ppcor,
psych,
purrr,
shiny (>= 1.3.2),
stats,
stringr,
tibble (>= 2.1.3),
tidyr,
UCSCXenaTools,
utils
Suggests:
covr (>= 3.2.1),
cowplot,
DT (>= 0.5),
furrr,
future,
ggrepel,
ggstatsplot,
knitr,
pacman,
plotly,
plyr,
RColorBrewer (>= 1.1.2),
rmarkdown,
scales,
survival,
survminer,
testthat (>= 2.0.1)
VignetteBuilder:
knitr
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
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