<?xml version="1.0" encoding="UTF-8"?>
<!--
  ~ Copyright (c) 2010. The Genome Analysis Centre, Norwich, UK
  ~ MISO project contacts: Robert Davey, Mario Caccamo @ TGAC
  ~
  ~ **********************************************************************
  ~
  ~ This file is part of MISO.
  ~
  ~ MISO is free software: you can redistribute it and/or modify
  ~ it under the terms of the GNU General Public License as published by
  ~ the Free Software Foundation, either version 3 of the License, or
  ~ (at your option) any later version.
  ~
  ~ MISO is distributed in the hope that it will be useful,
  ~ but WITHOUT ANY WARRANTY; without even the implied warranty of
  ~ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  ~ GNU General Public License for more details.
  ~
  ~ You should have received a copy of the GNU General Public License
  ~ along with MISO.  If not, see <http://www.gnu.org/licenses/>.
  ~
  ~ **********************************************************************
  -->

<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>uk.ac.bbsrc.tgac.miso</groupId>
  <artifactId>miso</artifactId>
  <packaging>pom</packaging>
  <version>0.2.1-SNAPSHOT</version>
  <name>MISO Framework</name>
  <url>http://www.tgac.ac.uk/miso</url>

  <!-- Reporting/Documentation output -->
  <reporting>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-javadoc-plugin</artifactId>
        <version>2.9</version>
        <configuration>
          <stylesheetfile>${basedir}/src/main/javadoc/stylesheet.css</stylesheetfile>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-project-info-reports-plugin</artifactId>
        <version>2.2</version>
        <reportSets>
          <reportSet>
            <reports>
              <!-- <report>dependencies</report> -->
              <report>project-team</report>
              <report>mailing-list</report>
              <report>cim</report>
              <report>issue-tracking</report>
              <report>license</report>
              <report>scm</report>
              <report>index</report>
            </reports>
          </reportSet>
        </reportSets>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-release-plugin</artifactId>
        <version>2.1</version>
        <configuration>
          <preparationGoals>clean verify install</preparationGoals>
        </configuration>
      </plugin>
    </plugins>
  </reporting>

  <!-- Licensing -->
  <licenses>
    <license>
      <name>GNU Lesser General Public License</name>
      <url>http://www.gnu.org/copyleft/lesser.html</url>
      <distribution>repo</distribution>
    </license>
  </licenses>

  <!-- Bug Tracker -->
  <issueManagement>
    <system>jira</system>
    <url>http://jira.tgac.bbsrc.ac.uk/browse/MISO</url>
  </issueManagement>

  <!-- Developer Listing -->
  <developers>
    <developer>
      <id>davey</id>
      <name>Rob Davey</name>
      <email>robert.davey@tgac.ac.uk</email>
      <organization>TGAC</organization>
      <organizationUrl>http://www.tgac.ac.uk/bioinformatics/sequencing-informatics/</organizationUrl>
      <roles>
        <role>administrator</role>
        <role>Developer</role>
      </roles>
      <timezone>0</timezone>
      <properties/>
    </developer>

    <developer>
      <id>bianx</id>
      <name>Xingdong Bian</name>
      <email>xingdong.bian@tgac.ac.uk</email>
      <organization>TGAC</organization>
      <organizationUrl>http://www.tgac.ac.uk/bioinformatics/sequence-informatics/core-bioinformatics/</organizationUrl>
      <roles>
        <role>administrator</role>
        <role>Developer</role>
      </roles>
      <timezone>0</timezone>
      <properties/>
    </developer>

    <developer>
      <id>thankia</id>
      <name>Anil Thanki</name>
      <email>anil.thanki@tgac.ac.uk</email>
      <organization>TGAC</organization>
      <organizationUrl>http://www.tgac.ac.uk/bioinformatics/sequence-informatics/core-bioinformatics/</organizationUrl>
      <roles>
        <role>administrator</role>
        <role>Developer</role>
      </roles>
      <timezone>0</timezone>
      <properties/>
    </developer>
  </developers>

  <!-- SVN connection -->
  <scm>
    <connection>
      scm:git:https://www.github.com/TGAC/miso-lims
    </connection>
    <developerConnection>
      scm:git:ssh://www.github.com/TGAC/miso-lims
    </developerConnection>
    <url>
      https://www.github.com/TGAC/miso-lims
    </url>
  </scm>

  <!-- Maven repository deploy -->
  <distributionManagement>
    <downloadUrl>https://repos.tgac.ac.uk/maven/repo</downloadUrl>
    <repository>
      <id>miso-releases</id>
      <name>MISO repository</name>
      <url>scp://repos.tgac.ac.uk/storage/html/maven/miso/releases</url>
    </repository>
    <snapshotRepository>
      <id>miso-snapshots</id>
      <name>MISO snapshot repository</name>
      <url>scp://repos.tgac.ac.uk/storage/html/maven/miso/snapshots</url>
    </snapshotRepository>
  </distributionManagement>

  <!-- Maven repository download -->
  <repositories>
    <repository>
      <id>hasbanana-repo</id>
      <name>hasbanana Maven Repository</name>
      <url>http://www.hasbanana.com/maven/repo</url>
    </repository>

    <repository>
      <id>tgac-repo</id>
      <name>TGAC Maven Repository</name>
      <url>https://repos.tgac.ac.uk/maven/repo</url>
      <releases>
        <enabled>true</enabled>
        <updatePolicy>always</updatePolicy>
      </releases>
      <snapshots>
        <enabled>true</enabled>
        <updatePolicy>always</updatePolicy>
      </snapshots>
    </repository>

    <repository>
      <id>tgac-snapshots-repo</id>
      <name>TGAC Maven Snapshots Repository</name>
      <url>https://repos.tgac.ac.uk/maven/miso/snapshots</url>
      <releases>
        <enabled>false</enabled>
        <updatePolicy>always</updatePolicy>
      </releases>
      <snapshots>
        <enabled>true</enabled>
        <updatePolicy>always</updatePolicy>
      </snapshots>
    </repository>

    <repository>
      <id>tgac-releases-repo</id>
      <name>TGAC Maven Releases Repository</name>
      <url>https://repos.tgac.ac.uk/maven/miso/releases</url>
      <releases>
        <enabled>true</enabled>
        <updatePolicy>always</updatePolicy>
      </releases>
      <snapshots>
        <enabled>false</enabled>
        <updatePolicy>always</updatePolicy>
      </snapshots>
    </repository>

    <repository>
      <id>spring-snapshot</id>
      <name>Spring Portfolio Milestone Repository</name>
      <url>http://maven.springframework.org/snapshot</url>
      <snapshots>
        <enabled>true</enabled>
      </snapshots>
    </repository>

    <repository>
      <id>Atlassian Maven Repository</id>
      <url>https://maven.atlassian.com/public</url>
    </repository>

    <repository>
      <id>spring-maven-release</id>
      <name>Springframework Maven Repository</name>
      <url>http://maven.springframework.org/release</url>
    </repository>
    <repository>
      <id>spring-maven-milestone</id>
      <name>Springframework Maven Repository</name>
      <url>http://maven.springframework.org/milestone</url>
    </repository>
    <repository>
      <id>springsource-milestone</id>
      <url>http://repository.springsource.com/maven/bundles/milestone</url>
    </repository>
    <repository>
      <id>springsource-external</id>
      <url>http://repository.springsource.com/maven/bundles/external</url>
    </repository>
    <repository>
      <id>springsource-snapshot</id>
      <url>http://repository.springsource.com/maven/bundles/snapshot</url>
    </repository>
    <repository>
      <id>seqwaremaven.oicr.on.ca</id>
      <name>seqwaremaven.oicr.on.ca-releases</name>
      <url>https://seqwaremaven.oicr.on.ca/artifactory/gsi-dependencies</url>
    </repository>
  </repositories>

  <pluginRepositories>
    <pluginRepository>
      <id>miso-releases</id>
      <name>MISO repository</name>
      <url>https://repos.tgac.ac.uk/maven/miso/releases</url>
      <releases>
        <enabled>true</enabled>
        <updatePolicy>always</updatePolicy>
      </releases>
    </pluginRepository>

    <pluginRepository>
      <id>miso-snapshots</id>
      <name>MISO snapshot repository</name>
      <url>https://repos.tgac.ac.uk/maven/miso/snapshots</url>
      <snapshots>
        <enabled>true</enabled>
        <updatePolicy>always</updatePolicy>
      </snapshots>
    </pluginRepository>

    <pluginRepository>
      <id>apache-snapshots</id>
      <name>apache snapshots repository</name>
      <url>http://repository.apache.org/snapshots</url>
      <snapshots>
        <updatePolicy>never</updatePolicy>
      </snapshots>
    </pluginRepository>

    <pluginRepository>
      <id>Atlassian Maven Repository</id>
      <url>https://maven.atlassian.com/public</url>
    </pluginRepository>

  </pluginRepositories>

  <!-- Required Build Plugins -->
  <build>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <configuration>
          <source>1.7</source>
          <target>1.7</target>
          <encoding>${project.build.sourceEncoding}</encoding>
        </configuration>
      </plugin>

      <plugin>
        <artifactId>maven-surefire-plugin</artifactId>
        <version>2.5</version>
        <configuration>
          <includes>
            <include>**/*Suite.java</include>
          </includes>
        </configuration>
      </plugin>

      <plugin>
        <groupId>com.atlassian.maven.plugins</groupId>
        <artifactId>maven-clover2-plugin</artifactId>
        <version>3.1.2</version>
        <configuration>
          <licenseLocation>clover.license</licenseLocation>
        </configuration>
      </plugin>
      
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-javadoc-plugin</artifactId>
        <version>2.9</version>
        <configuration>
          <stylesheetfile>${basedir}/src/main/javadoc/stylesheet.css</stylesheetfile>
        </configuration>
      </plugin>      
    </plugins>

    <pluginManagement>
      <plugins>
        <plugin>
          <groupId>org.apache.maven.plugins</groupId>
          <artifactId>maven-site-plugin</artifactId>
          <version>2.1.1</version>
        </plugin>
      </plugins>
    </pluginManagement>
  </build>

  <dependencies>
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.5</version>
      <scope>test</scope>
    </dependency>

    <dependency>
      <groupId>org.slf4j</groupId>
      <artifactId>slf4j-api</artifactId>
      <version>1.6.1</version>
    </dependency>

    <dependency>
      <groupId>org.slf4j</groupId>
      <artifactId>slf4j-log4j12</artifactId>
      <version>1.6.0</version>
    </dependency>
  </dependencies>

  <modules>
    <module>integration-tools</module>

    <module>core</module>
    <module>run-tools</module>

    <module>spring</module>
    <module>miso-web</module>

    <module>tagbarcode-strategies</module>
  </modules>

  <profiles>
    <profile>
      <id>external</id>
      <modules>
        <module>sqlstore</module>
        <module>runstats-client</module>
        <module>notification-consumer-services</module>
        <module>notification-server</module>

        <module>demo-notification-client</module>
        <module>demo-task</module>
      </modules>
      <activation>
        <property>
          <name>release</name>
          <value>external</value>
        </property>
      </activation>
    </profile>
  </profiles>

  <properties>
    <simlims-version>0.0.5-SNAPSHOT</simlims-version>
    <spring-version>3.1.3.RELEASE</spring-version>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
  </properties>

</project>