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# sigminer: 癌症基因组突变模式分析工具箱 <img src="man/figures/logo.png" align="right"  height="140" width="120" alt="logo"/>

[![CRAN
status](https://www.r-pkg.org/badges/version/sigminer)](https://cran.r-project.org/package=sigminer)
[![lifecycle](https://img.shields.io/badge/lifecycle-stable-blue.svg)](https://www.tidyverse.org/lifecycle/#stable)
![R-CMD-check](https://github.com/ShixiangWang/sigminer/workflows/R-CMD-check/badge.svg)
[![Coverage
status](https://codecov.io/gh/ShixiangWang/sigminer/branch/master/graph/badge.svg)](https://codecov.io/github/ShixiangWang/sigminer?branch=master)
[![](http://cranlogs.r-pkg.org/badges/grand-total/sigminer?color=orange)](https://cran.r-project.org/package=sigminer)
[![Closed
issues](https://img.shields.io/github/issues-closed/ShixiangWang/sigminer.svg)](https://github.com/ShixiangWang/sigminer/issues?q=is%3Aissue+is%3Aclosed)

## 安装

从 CRAN 上安装稳定版本：

``` r
install.packages("sigminer")
# Or
BiocManager::install("sigminer")
```

从 Gitee 上安装开发版本：

``` r
remotes::install_git("https://gitee.com/ShixiangWang/sigminer")
```

## 使用文档

完整的文档请阅读 <https://shixiangwang.gitee.io/sigminer-doc>，
整理好的开放的函数列表请阅读 <https://shixiangwang.gitee.io/sigminer/reference/index.html>。

## 引用

-----

***Copy number signature analyses in prostate cancer reveal distinct
etiologies and clinical outcomes, under submission***

-----

Currently, **sigminer** has not been published. If you use **sigminer**
in academic field, please cite our recent
    work:

Wang, Shixiang, et al. "The predictive power of tumor mutational burden 
        in lung cancer immunotherapy response is influenced by patients' sex."
        International journal of cancer (2019).

and the paper implementing NMF in R:

Gaujoux, Renaud, and Cathal Seoighe. "A Flexible R Package for 
        Nonnegative Matrix Factorization."" BMC Bioinformatics 11, no. 1 (December 2010).

一键复制编辑原始数据按行查看历史

提交于 2020-04-13 15:07 . update doc & add readme for chinese

sigminer: 癌症基因组突变模式分析工具箱

安装

从 CRAN 上安装稳定版本：

install.packages("sigminer")
# Or
BiocManager::install("sigminer")

从 Gitee 上安装开发版本：

remotes::install_git("https://gitee.com/ShixiangWang/sigminer")

使用文档

完整的文档请阅读 https://shixiangwang.gitee.io/sigminer-doc，整理好的开放的函数列表请阅读 https://shixiangwang.gitee.io/sigminer/reference/index.html。

引用

Copy number signature analyses in prostate cancer reveal distinct etiologies and clinical outcomes, under submission

Currently, sigminer has not been published. If you use sigminer in academic field, please cite our recent work:

Wang, Shixiang, et al. "The predictive power of tumor mutational burden 
    in lung cancer immunotherapy response is influenced by patients' sex."
    International journal of cancer (2019).

and the paper implementing NMF in R:

Gaujoux, Renaud, and Cathal Seoighe. "A Flexible R Package for 
    Nonnegative Matrix Factorization."" BMC Bioinformatics 11, no. 1 (December 2010).

R

1

https://gitee.com/vikyou/sigminer.git

git@gitee.com:vikyou/sigminer.git

vikyou

sigminer

sigminer

master