1 Star 1 Fork 0

wangcl_deep / Huatuo-Llama-Med-Chinese

加入 Gitee
与超过 1200万 开发者一起发现、参与优秀开源项目,私有仓库也完全免费 :)
免费加入
克隆/下载
贡献代码
同步代码
取消
提示: 由于 Git 不支持空文件夾,创建文件夹后会生成空的 .keep 文件
Loading...
README
Apache-2.0

中文 | English

SCIR-HI-HuaTuo

华驼(HuaTuo): 基于中文医学知识的LLaMA微调模型

HuaTuo: Tuning LLaMA Model With Chinese Medical Instructions

Code License Python 3.9+

本项目开源了经过中文医学指令精调/指令微调(Instruct-tuning) 的LLaMA-7B模型。我们通过医学知识图谱和GPT3.5 API构建了中文医学指令数据集,并在此基础上对LLaMA进行了指令微调,提高了LLaMA在医疗领域的问答效果。

基于相同的数据,我们还训练了医疗版本的ChatGLM模型: ChatGLM-6B-Med

我们即将发布我们研发的新模型-扁鹊(PienChueh),欢迎大家届时使用体验。

A Quick Start

首先安装依赖包,python环境建议3.9+

pip install -r requirements.txt

模型下载

LORA权重可以通过百度网盘HuggingFace下载

下载LORA权重并解压,解压后的格式如下:

lora-llama-med/
  - adapter_config.json		# LoRA权重配置文件
  - adapter_model.bin		# LoRA权重文件

Infer

我们在./data/infer.json中提供了一些测试用例,可以替换成其它的数据集,请注意保持格式一致

运行infer脚本

bash ./scripts/infer.sh

也可参考./scripts/test.sh

数据集构建

我们采用了公开和自建的中文医学知识库,主要参考了cMeKG。 医学知识库围绕疾病、药物、检查指标等构建,字段包括并发症,高危因素,组织学检查,临床症状,药物治疗,辅助治疗等。知识库示例如下:

{"中心词": "偏头痛", "相关疾病": ["妊娠合并偏头痛", "恶寒发热"], "相关症状": ["皮肤变硬", "头部及眼后部疼痛并能听到连续不断的隆隆声", "晨起头痛加重"], "所属科室": ["中西医结合科", "内科"], "发病部位": ["头部"]}

我们利用GPT3.5接口围绕医学知识库构建问答数据,设置了多种Prompt形式来充分利用知识。

指令微调的训练集数据示例如下:

"问题:一位年轻男性长期使用可卡因,突然出现胸痛、呕吐、出汗等症状,经检查发现心电图反映心肌急性损伤,请问可能患的是什么疾病?治疗方式是什么?"
回答: 可能患的是心肌梗塞,需要进行维拉帕米、依普利酮、硝酸甘油、ß阻滞剂、吗啡等药物治疗,并进行溶栓治疗、低分子量肝素、钙通道阻滞剂等辅助治疗。此外需要及时停用可卡因等药物,以防止病情加重。"

我们提供了模型的训练数据集,共计八千余条,需要注意的是,虽然训练集的构建融入了知识,但是仍存在错误和不完善的地方,后续我们会利用更好的策略迭代更新数据集。

指令微调数据集质量仍有限,后续将进行不断迭代,同时医学知识库和数据集构建代码还在整理中,整理完成将会发布。

Finetune

如果想用自己的数据集微调LLaMA,请按照./data/llama_data.json的格式构建自己的数据集 运行finetune脚本

bash ./scripts/finetune.sh

训练细节

计算资源需求

我们在一张A100-SXM-80GB显卡上进行了训练,训练总轮次10轮,耗时约2h17m。batch_size=128的情况下显存占用在40G左右。预计3090/4090显卡(24GB显存)以上显卡可以较好支持,根据显存大小来调整batch_size。

实验过程

超参设置和实验过程可以参考wandb的链接: https://wandb.ai/thinksoso/llama_med/runs/a5wgcnzt/overview?workspace=user-thinksoso

模型效果对比

测试输入 Llama输出 Alpaca输出 Huatuo华驼输出
小张最近感觉身体不适,出现心悸、气促等症状。体检发现心脏扩大、搏动减弱。 问题:小张最近感觉身体不适,出现心悸、气促等症状。体检发现心脏扩大、搏动减弱。 最近,小张一直感觉身体不舒服,有心烦意乱、呼吸急促等症状。体格检查显示心脏增大,肌肉无力。 小张可能患有心肌炎,建议尽快到医院进行检查和治疗。治疗方案包括药物治疗和手术治疗。
麻风病和儿童哮喘的病因是否一致? 儿童哮喘和麻风病的病因是一致,但是儿童哮喘和麻风病的病因不一致 是的,哮喘和儿童喘息有相似的原因。 不一致,麻风病的病因是麻风杆菌感染,而儿童哮喘的病因是喂养不良、吸烟等因素。
一位患者出现了持续性的胀痛和黄疸,经影像学检查后确诊为肝胆管结石病,应该采取哪些治疗方案? 肝胆管结石病患者应该采取哪些治疗方案? 患者应接受手术和化疗相结合的治疗。 针对肝胆管结石病,治疗方案包括手术治疗、药物治疗和辅助治疗等。具体治疗方案需要根据患者的具体情况而定。

项目参与者

本项目由哈尔滨工业大学社会计算与信息检索研究中心健康智能组王昊淳刘驰席奴瓦强泽文李子健完成,指导教师为赵森栋副教授,秦兵教授以及刘挺教授。

致谢

本项目参考了以下开源项目,在此对相关项目和研究开发人员表示感谢。

免责声明

本项目相关资源仅供学术研究之用,严禁用于商业用途。使用涉及第三方代码的部分时,请严格遵循相应的开源协议。模型生成的内容受模型计算、随机性和量化精度损失等因素影响,本项目无法对其准确性作出保证。本项目数据集绝大部分由模型生成,即使符合某些医学事实,也不能被用作实际医学诊断的依据。对于模型输出的任何内容,本项目不承担任何法律责任,亦不对因使用相关资源和输出结果而可能产生的任何损失承担责任。

Citation

如果你使用了本项目的数据或者代码,请声明引用

@misc{wang2023huatuo,
      title={HuaTuo: Tuning LLaMA Model with Chinese Medical Knowledge}, 
      author={Haochun Wang and Chi Liu and Nuwa Xi and Zewen Qiang and Sendong Zhao and Bing Qin and Ting Liu},
      year={2023},
      eprint={2304.06975},
      archivePrefix={arXiv},
      primaryClass={cs.CL}
}
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, and distribution as defined by Sections 1 through 9 of this document. "Licensor" shall mean the copyright owner or entity authorized by the copyright owner that is granting the License. "Legal Entity" shall mean the union of the acting entity and all other entities that control, are controlled by, or are under common control with that entity. For the purposes of this definition, "control" means (i) the power, direct or indirect, to cause the direction or management of such entity, whether by contract or otherwise, or (ii) ownership of fifty percent (50%) or more of the outstanding shares, or (iii) beneficial ownership of such entity. "You" (or "Your") shall mean an individual or Legal Entity exercising permissions granted by this License. "Source" form shall mean the preferred form for making modifications, including but not limited to software source code, documentation source, and configuration files. "Object" form shall mean any form resulting from mechanical transformation or translation of a Source form, including but not limited to compiled object code, generated documentation, and conversions to other media types. "Work" shall mean the work of authorship, whether in Source or Object form, made available under the License, as indicated by a copyright notice that is included in or attached to the work (an example is provided in the Appendix below). "Derivative Works" shall mean any work, whether in Source or Object form, that is based on (or derived from) the Work and for which the editorial revisions, annotations, elaborations, or other modifications represent, as a whole, an original work of authorship. For the purposes of this License, Derivative Works shall not include works that remain separable from, or merely link (or bind by name) to the interfaces of, the Work and Derivative Works thereof. "Contribution" shall mean any work of authorship, including the original version of the Work and any modifications or additions to that Work or Derivative Works thereof, that is intentionally submitted to Licensor for inclusion in the Work by the copyright owner or by an individual or Legal Entity authorized to submit on behalf of the copyright owner. For the purposes of this definition, "submitted" means any form of electronic, verbal, or written communication sent to the Licensor or its representatives, including but not limited to communication on electronic mailing lists, source code control systems, and issue tracking systems that are managed by, or on behalf of, the Licensor for the purpose of discussing and improving the Work, but excluding communication that is conspicuously marked or otherwise designated in writing by the copyright owner as "Not a Contribution." "Contributor" shall mean Licensor and any individual or Legal Entity on behalf of whom a Contribution has been received by Licensor and subsequently incorporated within the Work. 2. Grant of Copyright License. Subject to the terms and conditions of this License, each Contributor hereby grants to You a perpetual, worldwide, non-exclusive, no-charge, royalty-free, irrevocable copyright license to reproduce, prepare Derivative Works of, publicly display, publicly perform, sublicense, and distribute the Work and such Derivative Works in Source or Object form. 3. Grant of Patent License. Subject to the terms and conditions of this License, each Contributor hereby grants to You a perpetual, worldwide, non-exclusive, no-charge, royalty-free, irrevocable (except as stated in this section) patent license to make, have made, use, offer to sell, sell, import, and otherwise transfer the Work, where such license applies only to those patent claims licensable by such Contributor that are necessarily infringed by their Contribution(s) alone or by combination of their Contribution(s) with the Work to which such Contribution(s) was submitted. If You institute patent litigation against any entity (including a cross-claim or counterclaim in a lawsuit) alleging that the Work or a Contribution incorporated within the Work constitutes direct or contributory patent infringement, then any patent licenses granted to You under this License for that Work shall terminate as of the date such litigation is filed. 4. Redistribution. You may reproduce and distribute copies of the Work or Derivative Works thereof in any medium, with or without modifications, and in Source or Object form, provided that You meet the following conditions: (a) You must give any other recipients of the Work or Derivative Works a copy of this License; and (b) You must cause any modified files to carry prominent notices stating that You changed the files; and (c) You must retain, in the Source form of any Derivative Works that You distribute, all copyright, patent, trademark, and attribution notices from the Source form of the Work, excluding those notices that do not pertain to any part of the Derivative Works; and (d) If the Work includes a "NOTICE" text file as part of its distribution, then any Derivative Works that You distribute must include a readable copy of the attribution notices contained within such NOTICE file, excluding those notices that do not pertain to any part of the Derivative Works, in at least one of the following places: within a NOTICE text file distributed as part of the Derivative Works; within the Source form or documentation, if provided along with the Derivative Works; or, within a display generated by the Derivative Works, if and wherever such third-party notices normally appear. The contents of the NOTICE file are for informational purposes only and do not modify the License. You may add Your own attribution notices within Derivative Works that You distribute, alongside or as an addendum to the NOTICE text from the Work, provided that such additional attribution notices cannot be construed as modifying the License. You may add Your own copyright statement to Your modifications and may provide additional or different license terms and conditions for use, reproduction, or distribution of Your modifications, or for any such Derivative Works as a whole, provided Your use, reproduction, and distribution of the Work otherwise complies with the conditions stated in this License. 5. Submission of Contributions. Unless You explicitly state otherwise, any Contribution intentionally submitted for inclusion in the Work by You to the Licensor shall be under the terms and conditions of this License, without any additional terms or conditions. Notwithstanding the above, nothing herein shall supersede or modify the terms of any separate license agreement you may have executed with Licensor regarding such Contributions. 6. Trademarks. This License does not grant permission to use the trade names, trademarks, service marks, or product names of the Licensor, except as required for reasonable and customary use in describing the origin of the Work and reproducing the content of the NOTICE file. 7. Disclaimer of Warranty. Unless required by applicable law or agreed to in writing, Licensor provides the Work (and each Contributor provides its Contributions) on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied, including, without limitation, any warranties or conditions of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A PARTICULAR PURPOSE. You are solely responsible for determining the appropriateness of using or redistributing the Work and assume any risks associated with Your exercise of permissions under this License. 8. Limitation of Liability. In no event and under no legal theory, whether in tort (including negligence), contract, or otherwise, unless required by applicable law (such as deliberate and grossly negligent acts) or agreed to in writing, shall any Contributor be liable to You for damages, including any direct, indirect, special, incidental, or consequential damages of any character arising as a result of this License or out of the use or inability to use the Work (including but not limited to damages for loss of goodwill, work stoppage, computer failure or malfunction, or any and all other commercial damages or losses), even if such Contributor has been advised of the possibility of such damages. 9. Accepting Warranty or Additional Liability. While redistributing the Work or Derivative Works thereof, You may choose to offer, and charge a fee for, acceptance of support, warranty, indemnity, or other liability obligations and/or rights consistent with this License. However, in accepting such obligations, You may act only on Your own behalf and on Your sole responsibility, not on behalf of any other Contributor, and only if You agree to indemnify, defend, and hold each Contributor harmless for any liability incurred by, or claims asserted against, such Contributor by reason of your accepting any such warranty or additional liability. END OF TERMS AND CONDITIONS APPENDIX: How to apply the Apache License to your work. To apply the Apache License to your work, attach the following boilerplate notice, with the fields enclosed by brackets "[]" replaced with your own identifying information. (Don't include the brackets!) The text should be enclosed in the appropriate comment syntax for the file format. We also recommend that a file or class name and description of purpose be included on the same "printed page" as the copyright notice for easier identification within third-party archives. Copyright 2023 Rohan Taori, Ishaan Gulrajani, Tianyi Zhang, Yann Dubois, Xuechen Li Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

简介

Repo for HuaTuo (华驼), Llama-7B tuned with Chinese medical knowledge. 华驼模型仓库,基于中文医学知识的LLaMA模型指令微调 展开 收起
Python 等 2 种语言
Apache-2.0
取消

发行版

暂无发行版

贡献者

全部

近期动态

加载更多
不能加载更多了
1
https://gitee.com/wangcl_deep/Huatuo-Llama-Med-Chinese.git
git@gitee.com:wangcl_deep/Huatuo-Llama-Med-Chinese.git
wangcl_deep
Huatuo-Llama-Med-Chinese
Huatuo-Llama-Med-Chinese
main

搜索帮助