OpenMS

----------------------------------------------------------------- OpenMS -- Open-Source Mass Spectrometry ----------------------------------------------------------------- Copyright The OpenMS Team -- Eberhard Karls University Tuebingen, ETH Zurich, and Freie Universitaet Berlin 2002-2017. This software is released under a three-clause BSD license: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of any author or any participating institution may be used to endorse or promote products derived from this software without specific prior written permission. For a full list of authors, refer to the file AUTHORS. ----------------------------------------------------------------- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. The source code of OpenMS is available via our homepage http://www.OpenMS.de OpenMS depends on third party libraries which are listed below. The source code of these libraries is available from their website or can be obtained via a "contrib" package, which specifically configures these libraries for OpenMS and is available on our website. The respective license files for the contrib libraries can be found in the "contrib" package root directory or online (see below). SeqAn - URL: https://www.seqan.de/ - License: https://github.com/seqan/seqan/blob/master/LICENSE libSVM - URL: http://www.csie.ntu.edu.tw/~cjlin/libsvm/ - License: http://www.csie.ntu.edu.tw/~cjlin/libsvm/COPYRIGHT GLPK - URL: http://www.gnu.org/s/glpk/ - License: http://www.gnu.org/copyleft/gpl.html Qt 4 - URL: https://www.qt.io/ - License (links): http://doc.qt.io/qt-4.8/opensourceedition.html Xerces-C - URL: http://xerces.apache.org/xerces-c/index.html - License: http://www.apache.org/licenses/LICENSE-2.0.html Boost (headers) - URL: http://www.boost.org/ - License: http://www.boost.org/more/license_info.html ZLib - URL: http://www.zlib.net - License: http://www.zlib.net/zlib_license.html BZ2Lib - URL: http://www.bzip.org/ - License: http://www.bzip.org/1.0.5/bzip2-manual-1.0.5.html Eigen - URL: http://eigen.tuxfamily.org/ - License: https://www.mozilla.org/en-US/MPL/2.0/ Geometric Tools (Wildmagic) - URL: https://www.geometrictools.com/ - License: http://www.boost.org/LICENSE_1_0.txt SQLite: - URL: https://www.sqlite.org/ - License: https://www.sqlite.org/copyright.html Kiss FFT `- URL: https://sourceforge.net/projects/kissfft/ - License: https://sourceforge.net/p/kissfft/code/ci/default/tree/COPYING --------------------- Search engines: ------------------------ OMSSA - URL: ftp://ftp.ncbi.nlm.nih.gov/pub/lewisg/omssa - License: Public Domain Percolator: - URL: http://percolator.ms/ - License: http://www.apache.org/licenses/LICENSE-2.0.html X!Tandem: - URL and source code: http://www.thegpm.org/tandem/ - License: http://www.perlfoundation.org/attachment/legal/artistic-2_0.txt MyriMatch: - URL and source code: https://www.ncbi.nlm.nih.gov/pubmed/17269722 - License: http://www.apache.org/licenses/LICENSE-2.0.txt MSGF+: - URL and source code: https://github.com/sangtaekim/msgfplus - License: https://github.com/sangtaekim/msgfplus/blob/master/LICENSE.txt Fido: - URL and source code: https://noble.gs.washington.edu/proj/fido/ - License: https://gist.github.com/hendrikweisser/2d10eb8bf1e370e6dfbb LuciPhOr2: - URL and source code: http://luciphor2.sourceforge.net/ - License: http://www.apache.org/licenses/LICENSE-2.0 SpectraST: - URL and source code: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/ trans_proteomic_pipeline/src/Search/SpectraST/ - License: https://www.gnu.org/licenses/gpl.html https://www.gnu.org/copyleft/lesser.html SIRIUS: - URL: https://bio.informatik.uni-jena.de/software/sirius/ - License: https://www.gnu.org/licenses/gpl Comet: - URL and source code: https://sourceforge.net/projects/comet-ms/ - License: http://www.apache.org/licenses/LICENSE-2.0.html